Resources


Software Credentialed Access

Forecasting immune effector cell-associated neurotoxicity syndrome after CAR T-cell therapy

Yalda Amidi, Christine Eckhardt, Syed Quadri, Preeti Malik, Marcos Santana Firme, Daniel Jones, Aayushee Jain, Husnain H. Danish, Daniel Rubin, Caron Jacobson, Sydney Cash, Jong Woo Lee, Jorg Dietrich, M. Brandon Westover

MATLAB code and de-identified data to forecast the onset and day-by-day trajectory of ICANS after CAR T-cell therapy (combined hidden Markov model + lasso logistic regression; 199-patient cohort, leave-one-patient-out cross-validation).

Published: July 7, 2026. Version: 1.0.0


Database Credentialed Access

Neurophysiologic Encephalopathy Severity Index (NESI) - Data and Code

Arka Roy, Katelyn Surrao, ChenXi Sun, Jin Jing, Tianyu Zhang, Aditya Gupta, Ryan A. Tesh, Imad Akbar, Kaileigh Gallagher, Marjan Sarami, Rajib Kanti Dey, Aysenur Yaramis, Alihan Yaramis, Zeeshan Haider, Utsav Patel, Laraib Jumani, Grace Bayas, Haoqi Sun, Wolfgang Ganglberger, Erika L. Juarez Martinez, Fábio A. Nascimento, Irfan S. Sheikh, Oluwaseun Akeju, Miles Berger, Eyal Y. Kimchi, Sahar F. Zafar, Christine A. Eckhardt, M Brandon Westover

A continuous, EEG-based index of encephalopathy severity (NESI) that maps RASS, GCS, CAM-S, and ICANS onto one physiological axis. Includes 10-minute EEG segments, MORGOTH features, trained models, derived tables, and the full analysis code.

Published: June 14, 2026. Version: 1.0.0


Database Credentialed Access

Automated Extraction of Seizures and Ictal-Interictal Continuum Patterns from EEG Reports to Enable Large-Scale Neurophysiology and Neurocritical Care Research - Data and Code

Shadi Sartipi, Deena S. Godfrey, Alexandra-Maria Tauțan, Marta P. Fernandes, Manohar Ghanta, Aditya Gupta, Bruce Nearing, Jennifer Kim, Aaron F. Struck, Tobias Loddenkemper, Jurriaan Peters, Jong Woo Lee, M. Brandon Westover, Sahar F. Zafar

Deidentified seizure and ictal-interictal continuum (IIC) data extracted from 156,582 EEG reports across three health systems (two adult, one pediatric), plus the LLM-based extraction pipeline. Companion to Sartipi et al. (IJMI, under review).

Published: June 1, 2026. Version: 1.0.0


Database Credentialed Access

Narcolepsy Risk Estimation from Clinical Notes

Niels Turley, Haoqi Sun, M Brandon Westover

Dataset and code for developing and validating machine learning models to phenotype narcolepsy type 1 (NT1) and narcolepsy type 2/idiopathic hypersomnia (NT2/IH) from multi-site electronic health record data, including cross-sectional classification

Published: March 2, 2026. Version: 1.0


Database Open Access

Assessing Risk of Health Outcomes From Brain Activity in Sleep

Haoqi Sun, Noor Adra, Muhammad Ayub, Wolfgang Ganglberger, Elissa Ye, Ziwei Fan, Aditya Gupta, Valdery Moura Junior, M Brandon Westover, Robert Thomas

Using sleep EEG to predict future health outcomes.

Published: Oct. 30, 2025. Version: 1.1


Model Open Access

Automated phenotyping of mild cognitive impairment and Alzheimer's disease and related dementias using electronic health records

Ruoqi Wei, Niels Turley, Aditya Gupta, Manohar Ghanta, Robert Thomas, Sahar Zafar, Haoqi Sun, M Brandon Westover

a MCI/ADRD EHR phenotyping model trained with python sklearn pipeline, injoblib format.

Published: Sept. 25, 2025. Version: 1.1


Database Restricted Access

SpikeNet 2.0

Jun Li, Daniel Goldenholz, Shenda Hong, Chenxi Sun, Jin Jing, M Brandon Westover

An expert-level deep learning model for detecting epileptiform discharges in EEG recordings at both event and whole-EEG levels.

Published: April 30, 2025. Version: 1.0


Database Restricted Access

Automated EEG-based prediction of delayed cerebral ischemia after subarachnoid hemorrhage

Zhongwei Jin, Wei-Long Zheng, M Brandon Westover, Jennifer Kim

Data and code to reproduce this paper: https://pmc.ncbi.nlm.nih.gov/articles/PMC9847346/

Published: April 4, 2025. Version: 1.0


Database Restricted Access

TEEGLLTEEG: This EEG Looks Like That EEG

Alina Jade Barnett, Stark Guo, Jin Jing, Cynthia Rudin, M Brandon Westover

TEEGLLTEEG

Published: March 26, 2025. Version: 1.2


Database Restricted Access

Morphological Prediction of CPAP Associated Acute Respiratory Instability (Self Similarity)

Thijs E Nassi, Gonzalo Labarca, Robert Thomas, M Brandon Westover

Algorithm to detect breathing pattern self-similarity to predict CPAP therapy outcomes in OSA

Published: March 3, 2025. Version: 1.0