Resources


Model Credentialed Access

Automated Prediction of Glasgow Coma Scale Scores from Unstructured Electronic Health Records: a Natural Language Processing Approach

Marta Fernandes, Niels Turley, Haoqi Sun, Shibani Mukerji, Lidia M. V. R. Moura, M Brandon Westover, Sahar Zafar

Prediction of Glasgow Coma Scale scores from Unstructured Electronic Health Records using NLP

glasgow coma scale natural language processing ordinal regression electronic health records clinical notes

Published: April 17, 2026. Version: 1.0.0

Model Credentialed Access

Automated extraction of post-stroke functional outcomes from unstructured electronic health records

Marta Fernandes, Kaileigh Gallagher, Niels Turley, Aditya Gupta, M Brandon Westover, Aneesh Singhal, Sahar Zafar

This project aims to automatically extract mRS scores for a post-stroke patient population from unstructured electronic health records using natural language processing

stroke natural language processing modified rankin scale machine learning

Published: Oct. 2, 2025. Version: 1.0.0

Model Credentialed Access

Automated extraction of stroke severity from unstructured electronic health records using natural language processing

Marta Fernandes, M Brandon Westover, Aneesh Singhal, Sahar Zafar

This project automatically extracts NIHSS scores from unstructured electronic health records using natural language processing

nihss nlp stroke

Published: Oct. 2, 2025. Version: 1.0.0

Database Credentialed Access

The Brain Imaging and Neurophysiology Database (BIND)

Charlotte Maschke, Peter Hadar, Yicheng Zhang, Jian Li, Gauri Ganjoo, Andrew Hoopes, Alessandro Guazzo, Aditya Gupta, Manohar Ghanta, Bruce Nearing, Christine Tsien Silvers, Bharath Gunapati, Robert Thomas, Jennifer Kim, Shibani Mukerji, Adrian Dalca, Sahar Zafar, Alice Lam, Emmanuel Mignot, M Brandon Westover

BIND Database 1: Neuroimaging Data (MRI, CT, PET, SPECT) that can be paired with EEG and PSG (found in the Harvard EEG Database https://bdsp.io/content/harvard-eeg-db/4.1/). LLMs helped categorize pathology.

ct mri brain imaging

Published: Sept. 9, 2025. Version: 1.0

Database Credentialed Access

Identification of patients with epilepsy using automated electronic health records phenotyping - Data and Code

Marta Fernandes, Sahar Zafar, M Brandon Westover

Code and data for identifying patients with epilepsy using automated electronic health records.

nlp ehr epilepsy

Published: June 5, 2025. Version: 1.0

Database Credentialed Access

Automated Extraction of Seizures and Ictal-Interictal Continuum Patterns from EEG Reports to Enable Large-Scale Neurophysiology and Neurocritical Care Research - Data and Code

Shadi Sartipi, Deena S. Godfrey, Alexandra-Maria Tauțan, Marta P. Fernandes, Manohar Ghanta, Aditya Gupta, Bruce Nearing, Jennifer Kim, Aaron F. Struck, Tobias Loddenkemper, Jurriaan Peters, Jong Woo Lee, M. Brandon Westover, Sahar F. Zafar

Deidentified seizure and ictal-interictal continuum (IIC) data extracted from 156,582 EEG reports across three health systems (two adult, one pediatric), plus the LLM-based extraction pipeline. Companion to Sartipi et al. (IJMI, under review).

Published: June 1, 2026. Version: 1.0.0

Software Credentialed Access

Effects of epileptiform activity on discharge outcome in critically ill patients

Harsh Parikh, Kentaro Hoffman, Haoqi Sun, Sahar F. Zafar, Wendong Ge, Jin Jing, Lin Liu, Jimeng Sun, Aaron F Struck, Alexander Volfovsky, Cynthia Rudin, M. Brandon Westover

De-identified data and a PK-PD + MALTS causal-inference pipeline reproducing the effect of untreated epileptiform-activity burden on poor discharge outcome in critically ill patients (Parikh et al., Lancet Digital Health 2023).

Published: July 11, 2026. Version: 1.0.1

Software Credentialed Access

Automated annotation of epileptiform burden and its association with outcomes

Sahar F. Zafar, Eric Rosenthal, Jin Jing, Wendong Ge, Mohammad Tabaeizadeh, Hassan Aboul Nour, Maryum Shoukat, Haoqi Sun, Farrukh Javed, Solomon Kassa, Muhammad Edhi, Elahe Bordbar, John Gallagher, Valdery Moura, Manohar Ghanta, Yu-Ping Shao, Sungtae An, Jimeng Sun, Andrew J. Cole, M. Brandon Westover

MATLAB code and de-identified data (1,991 patients) relating automatically-quantified ictal-interictal-continuum/seizure burden on continuous EEG to discharge outcome (Zafar et al., Ann Neurol 2021).

Published: July 11, 2026. Version: 1.0.0

Software Credentialed Access

Epileptiform activity and outcomes in toxic-metabolic encephalopathy

Paul M. Chen, Saskia S. Schuurmans Stekhoven, Hiba Haider, Jin Jing, Wendong Ge, Eric Rosenthal, M. Brandon Westover, Sahar F. Zafar

De-identified data and reproduction code for a retrospective cEEG study of ictal-interictal continuum patterns and outcomes in 121 patients with toxic-metabolic encephalopathy (MGH, 2012-2017).

Published: July 10, 2026. Version: 1.0.0

Software Credentialed Access

EEG-based grading of immune effector cell-associated neurotoxicity syndrome

Daniel Jones, Christine Eckhardt, Haoqi Sun, Ryan A. Tesh, Preeti Malik, Syed Quadri, Marcos Santana Firme, Meike van Sleuwen, Aayushee Jain, Ziwei Fan, Jin Jing, Wendong Ge, Fábio A. Nascimento, Irfan S. Sheikh, Caron Jacobson, Matthew J. Frigault, Eyal Y. Kimchi, Sydney Cash, Jong Woo Lee, Jorg Dietrich, M. Brandon Westover

An interpretable ordinal EEG-feature score (VE-ICANS) that grades the severity of immune effector cell-associated neurotoxicity syndrome (ICANS) after CAR-T therapy. Code + de-identified data.

Published: July 7, 2026. Version: 1.0.0