Resources


Database Credentialed Access

NIDX: A Machine Learning Approach for Identifying People with Neuroinfectious Diseases in Electronic Health Records

Arjun Singh, Shadi Sartipi, Haoqi Sun, Niels Turley, Sahar Zafar, Sudeshna Das, Marta Fernandes, M Brandon Westover, Shibani Mukerji

A machine learning approach to accurately identify neuroinfectious diseases from clinical notes.

electronic health records ehr phenotyping neuroinfectious diseases natural language processing

Published: May 31, 2025. Version: 1.0

Database Credentialed Access

The Brain Imaging and Neurophysiology Database (BIND)

Charlotte Maschke, Peter Hadar, Yicheng Zhang, Jian Li, Gauri Ganjoo, Andrew Hoopes, Alessandro Guazzo, Aditya Gupta, Manohar Ghanta, Bruce Nearing, Christine Tsien Silvers, Bharath Gunapati, Robert Thomas, Jennifer Kim, Shibani Mukerji, Adrian Dalca, Sahar Zafar, Alice Lam, Emmanuel Mignot, M Brandon Westover

BIND Database 1: Neuroimaging Data (MRI, CT, PET, SPECT) that can be paired with EEG and PSG (found in the Harvard EEG Database https://bdsp.io/content/harvard-eeg-db/4.1/). LLMs helped categorize pathology.

ct mri brain imaging

Published: Sept. 9, 2025. Version: 1.0

Database Credentialed Access

Automated phenotyping of mild cognitive impairment and dementias using electronic health records - Data and Code

Ruoqi Wei, Robert Thomas, M Brandon Westover, Haoqi Sun

Data and Code to reproduce results in "Automated phenotyping of mild cognitive impairment and dementias using electronic health records"

nlp ad mci

Published: June 5, 2025. Version: 1.0

Model Credentialed Access

Automated extraction of post-stroke functional outcomes from unstructured electronic health records

Marta Fernandes, Kaileigh Gallagher, Niels Turley, Aditya Gupta, M Brandon Westover, Aneesh Singhal, Sahar Zafar

This project aims to automatically extract mRS scores for a post-stroke patient population from unstructured electronic health records using natural language processing

stroke natural language processing machine learning modified rankin scale

Published: Oct. 2, 2025. Version: 1.0.0

Database Credentialed Access

The Boston Childrens Hospital Sleep Corpus

Ayush Tripathi, Wolfgang Ganglberger, Haoqi Sun, Callison Alcott, Niels Turley, Rebecca Fitzgerald, Ayan Mitra, Samuel Waters, Arnav Gupta, Aditya Gupta, Manohar Ghanta, Valdery Moura Junior, Samaneh Nasiri, Bruce Nearing, Katie Stone, Emmanuel Mignot, Dennis Hwang, Matthew Reyna, Zuzana Koscova, Chad Robichaux, Zhiyong Zhang, Qiao Li, Gauri Ganjoo, Lynn Marie Trotti, Gari Clifford, Christine Tsien Silvers, Bharath Gunapati, Robert Thomas, M Brandon Westover, Kiran Maski, Umakanth Katwa

The Boston Children’s Hospital (BCH) Sleep Corpus comprises 15,695 fully annotated pediatric polysomnography (PSG) recordings collected between 2010 and 2024.

Published: Aug. 6, 2025. Version: 1.0.1

Database Restricted Access

SpikeNet 2.0

Jun Li, Daniel Goldenholz, Shenda Hong, Chenxi Sun, Jin Jing, M Brandon Westover

An expert-level deep learning model for detecting epileptiform discharges in EEG recordings at both event and whole-EEG levels.

Published: April 30, 2025. Version: 1.0

Database Restricted Access

Ordinal Sleep Depth - Data and Code

Erik-Jan Meulenbrugge, Haoqi Sun, Wolfgang Ganglberger, Samaneh Nasiri, Robert Thomas, M Brandon Westover

Data and code for "Ordinal Sleep Depth: A Data-Driven Continuous Measurement of Sleep Depth"

Published: April 24, 2025. Version: 1.0

Database Restricted Access

Automated EEG-based prediction of delayed cerebral ischemia after subarachnoid hemorrhage

Zhongwei Jin, Wei-Long Zheng, M Brandon Westover, Jennifer Kim

Data and code to reproduce this paper: https://pmc.ncbi.nlm.nih.gov/articles/PMC9847346/

Published: April 4, 2025. Version: 1.0

Database Restricted Access

TEEGLLTEEG: This EEG Looks Like That EEG

Alina Jade Barnett, Stark Guo, Jin Jing, Cynthia Rudin, M Brandon Westover

TEEGLLTEEG

Published: March 26, 2025. Version: 1.2

Database Restricted Access

Cyclops: Automated detection of interictal epileptiform discharges with few EEG channels

Moritz Maximilian Alkofer, M Brandon Westover, Jin Jing, Daniel Goldenholz

Cyclops dataset

Published: March 1, 2025. Version: 2.0