Resources


Database Credentialed Access

NIDX: A Machine Learning Approach for Identifying People with Neuroinfectious Diseases in Electronic Health Records

Arjun Singh, Shadi Sartipi, Haoqi Sun, Niels Turley, Sahar Zafar, Sudeshna Das, Marta Fernandes, M Brandon Westover, Shibani Mukerji

A machine learning approach to accurately identify neuroinfectious diseases from clinical notes.

electronic health records ehr phenotyping natural language processing neuroinfectious diseases

Published: May 31, 2025. Version: 1.0

Database Credentialed Access

Identification of patients with epilepsy using automated electronic health records phenotyping - Data and Code

Marta Fernandes, Sahar Zafar, M Brandon Westover

Code and data for identifying patients with epilepsy using automated electronic health records.

ehr epilepsy nlp

Published: June 5, 2025. Version: 1.0

Database Credentialed Access

Automated phenotyping of mild cognitive impairment and dementias using electronic health records - Data and Code

Ruoqi Wei, Robert Thomas, M Brandon Westover, Haoqi Sun

Data and Code to reproduce results in "Automated phenotyping of mild cognitive impairment and dementias using electronic health records"

ad mci nlp

Published: June 5, 2025. Version: 1.0

Database Credentialed Access

The Human Sleep Project

Haoqi Sun, Wolfgang Ganglberger, Samaneh Nasiri, Aditya Gupta, Manohar Ghanta, Valdery Moura Junior, Sydney Cash, Katie Stone, Zhiyong Zhang, Gauri Ganjoo, Thijs E Nassi, Ruoqi Wei, Erik-Jan Meulenbrugge, Rhoda Au, Gari Clifford, Lynn Marie Trotti, Dennis Hwang, Emmanuel Mignot, Umakanth Katwa, M Brandon Westover

The Human Sleep Project (HSP) is a large collection of clinical sleep physiology recordings created to enable brain health research.

sleep brain health artificial intelligence

Published: Nov. 1, 2023. Version: 2.0

Database Open Access

Assessing Risk of Health Outcomes From Brain Activity in Sleep

Haoqi Sun, Noor Adra, Muhammad Ayub, Wolfgang Ganglberger, Elissa Ye, Ziwei Fan, Aditya Gupta, Valdery Moura Junior, M Brandon Westover, Robert Thomas

Using sleep EEG to predict future health outcomes.

Published: Oct. 22, 2024. Version: 1.0

Database Restricted Access

Cerebrospinal Fluid Testing for Neuroinvasive West Nile Virus and Measures to Improve Guideline Adherence

Carson Quinn, Karan Singh, Erik Klontz, Isaac Solomon, Shibani Mukerji

De-identified, dataset of 1,304 adult encounters with CSF-fluid West Nile virus testing patterns at two Mass General Brigham hospitals (2016-2023). Includes demographics, immune status, CSF/serum labs, WNV PCR & IgM results, guideline-adherence flags

Published: July 31, 2025. Version: 1.0.0

Database Restricted Access

Sleep Recordings from Wearable Devices in Meditators

Jayme Banks, Haoqi Sun, Robert Thomas, M Brandon Westover, Balachundhar Subramaniam

initial upload

Published: Feb. 28, 2025. Version: 1.0

Database Restricted Access

Targeted Metabolomics in the REGARDS Stroke Case-Cohort Study

Zsuzsanna Ament, Naruchorn Kijpaisalratana, Varun Bhave, Catharine Couch, Ana-Lucia Garcia Guarniz, Amit Patki, Mary Cushman, Suzanne Judd, Ryan Irvin, William Kimberly

This dataset contains metabolomics data from the REasons for Geographic and Racial Differences in Stroke (REGARDS) Study, a large, biracial cohort investigating metabolic biomarkers linked to stroke risk and health disparities across the United State

Published: Feb. 26, 2025. Version: 1.0.0

Software Open Access

Sleep Electroencaphalography-Based Brain Age Index

Haoqi Sun, Jefferson Tales Oliva, Oluwaseun Akeju, Robert Thomas, M Brandon Westover

Sleep EEG based brain age index is included in Luna v0.99 release.

Published: Nov. 13, 2024. Version: 0.99