Resources


Database Credentialed Access

NIDX: A Machine Learning Approach for Identifying People with Neuroinfectious Diseases in Electronic Health Records

Arjun Singh, Shadi Sartipi, Haoqi Sun, Niels Turley, Sahar Zafar, Sudeshna Das, Marta Fernandes, M Brandon Westover, Shibani Mukerji

A machine learning approach to accurately identify neuroinfectious diseases from clinical notes.

electronic health records ehr phenotyping neuroinfectious diseases natural language processing

Published: May 31, 2025. Version: 1.0

Model Credentialed Access

Automated extraction of post-stroke functional outcomes from unstructured electronic health records

Marta Fernandes, Kaileigh Gallagher, Niels Turley, Aditya Gupta, M Brandon Westover, Aneesh Singhal, Sahar Zafar

This project aims to automatically extract mRS scores for a post-stroke patient population from unstructured electronic health records using natural language processing

stroke natural language processing machine learning modified rankin scale

Published: Oct. 2, 2025. Version: 1.0.0

Model Credentialed Access

Automated extraction of stroke severity from unstructured electronic health records using natural language processing

Marta Fernandes, M Brandon Westover, Aneesh Singhal, Sahar Zafar

This project automatically extracts NIHSS scores from unstructured electronic health records using natural language processing

nihss nlp stroke

Published: Oct. 2, 2025. Version: 1.0.0

Database Credentialed Access

Identification of patients with epilepsy using automated electronic health records phenotyping - Data and Code

Marta Fernandes, Sahar Zafar, M Brandon Westover

Code and data for identifying patients with epilepsy using automated electronic health records.

nlp ehr epilepsy

Published: June 5, 2025. Version: 1.0

Database Credentialed Access

Automated phenotyping of mild cognitive impairment and dementias using electronic health records - Data and Code

Ruoqi Wei, Robert Thomas, M Brandon Westover, Haoqi Sun

Data and Code to reproduce results in "Automated phenotyping of mild cognitive impairment and dementias using electronic health records"

nlp ad mci

Published: June 5, 2025. Version: 1.0

Database Credentialed Access

The Human Sleep Project

Haoqi Sun, Wolfgang Ganglberger, Samaneh Nasiri, Aditya Gupta, Manohar Ghanta, Valdery Moura Junior, Sydney Cash, Katie Stone, Zhiyong Zhang, Gauri Ganjoo, Thijs E Nassi, Ruoqi Wei, Erik-Jan Meulenbrugge, Rhoda Au, Gari Clifford, Lynn Marie Trotti, Dennis Hwang, Emmanuel Mignot, Umakanth Katwa, M Brandon Westover

The Human Sleep Project (HSP) is a large collection of clinical sleep physiology recordings created to enable brain health research.

sleep brain health artificial intelligence

Published: Nov. 1, 2023. Version: 2.0

Model Open Access

Automated phenotyping of mild cognitive impairment and Alzheimer's disease and related dementias using electronic health records

Ruoqi Wei, Niels Turley, Aditya Gupta, Manohar Ghanta, Robert Thomas, Sahar Zafar, Haoqi Sun, M Brandon Westover

a MCI/ADRD EHR phenotyping model trained with python sklearn pipeline, injoblib format.

Published: Sept. 25, 2025. Version: 1.1

Database Open Access

Assessing Risk of Health Outcomes From Brain Activity in Sleep

Haoqi Sun, Noor Adra, Muhammad Ayub, Wolfgang Ganglberger, Elissa Ye, Ziwei Fan, Aditya Gupta, Valdery Moura Junior, M Brandon Westover, Robert Thomas

Using sleep EEG to predict future health outcomes.

Published: Oct. 22, 2024. Version: 1.0

Database Restricted Access

Cerebrospinal Fluid Testing for Neuroinvasive West Nile Virus and Measures to Improve Guideline Adherence

Carson Quinn, Karan Singh, Erik Klontz, Isaac Solomon, Shibani Mukerji

De-identified, dataset of 1,304 adult encounters with CSF-fluid West Nile virus testing patterns at two Mass General Brigham hospitals (2016-2023). Includes demographics, immune status, CSF/serum labs, WNV PCR & IgM results, guideline-adherence flags

Published: July 31, 2025. Version: 1.0.0

Database Restricted Access

Sleep Recordings from Wearable Devices in Meditators

Jayme Banks, Haoqi Sun, Robert Thomas, M Brandon Westover, Balachundhar Subramaniam

initial upload

Published: Feb. 28, 2025. Version: 1.0